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| Station | Location | Railroad |
|---|---|---|
| Allston | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Arnold | Boston | The New York, New Haven and Hartford Railroad Company |
| Ashmont | Boston | The New York, New Haven and Hartford Railroad Company |
| Back Bay | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| Beacon Park | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Beacon Street | Boston | Boston and Albany Railroad Company |
| Bellevue | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| Bird Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Blue Hill Avenue | Boston | The New York, New Haven and Hartford Railroad Company Massachusetts Bay Transportation Authority |
| Boston - Back Bay Station | Boston | Amtrak |
| Boston - North Station | Boston | Amtrak |
| Boston - South Station | Boston | Amtrak |
| Boston [Eastern] | Boston | Eastern Railroad Company |
| Boston [Fitchburg] | Boston | Fitchburg Railroad Company |
| Boston [North Station] | Boston | Boston and Maine Corporation |
| Boston [South Station] | Boston | Boston and Albany Railroad Company The New York, New Haven and Hartford Railroad Company The New York Central Railroad Company Penn Central Company |
| Boston Landing | Boston | Massachusetts Bay Transportation Authority |
| Boston, Hoosac Elevator | Boston | Boston and Maine Railroad |
| Boston, Hoosac Warehouse | Boston | Boston and Maine Railroad |
| Boston, Hoosac Wharves | Boston | Boston and Maine Railroad |
| Boston, Milk Station | Boston | Boston and Maine Railroad |
| Boston, Minot Street | Boston | Boston and Maine Railroad |
| Boston, Mystic Elevator | Boston | Boston and Maine Railroad |
| Boston, Mystic Wharf | Boston | Boston and Maine Railroad |
| Boston, Mystic-Hoosac Wharves | Boston | Boston and Maine Railroad |
| Boston, North Station | Boston | Boston and Maine Railroad |
| Boston, Rutherford Avenue | Boston | Boston and Maine Railroad |
| Boston, Union Station | Boston | Boston and Maine Railroad |
| Boston, Warren Bridge | Boston | Boston and Maine Railroad |
| Boston, Warren Bridge-Minot Street | Boston | Boston and Maine Railroad |
| Boylston Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Brighton | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Brookline Junction | Boston | Boston and Albany Railroad Company |
| Cedar Grove | Boston | The New York, New Haven and Hartford Railroad Company |
| Charlestown | Boston | Fitchburg Railroad Company |
| Chickering | Boston | The New York, New Haven and Hartford Railroad Company |
| Clarendon Hills | Boston | The New York, New Haven and Hartford Railroad Company |
| Crescent Avenue | Boston | The New York, New Haven and Hartford Railroad Company |
| Dorchester | Boston | The New York, New Haven and Hartford Railroad Company |
| Dudley Street | Boston | The New York, New Haven and Hartford Railroad Company |
| East Boston | Boston | Eastern Railroad Company |
| East Boston [B&A] | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| East Boston [BRB&L] | Boston | Boston, Revere Beach and Lynn Railroad |
| East Somerville | Boston | Boston and Maine Railroad Boston and Albany Railroad Company Boston and Maine Corporation |
| Fairmount | Boston | The New York, New Haven and Hartford Railroad Company Massachusetts Bay Transportation Authority |
| Faneuil | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Fields Corner | Boston | The New York, New Haven and Hartford Railroad Company |
| Forest Hills | Boston | The New York, New Haven and Hartford Railroad Company Massachusetts Bay Transportation Authority |
| Four Corners/Geneva Avenue | Boston | Massachusetts Bay Transportation Authority |
| Glenwood Avenue | Boston | The New York, New Haven and Hartford Railroad Company |
| Harbor View | Boston | Boston, Revere Beach and Lynn Railroad |
| Harrison Square | Boston | The New York, New Haven and Hartford Railroad Company |
| Harvard Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Hazelwood | Boston | The New York, New Haven and Hartford Railroad Company |
| Heath Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Highland | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| Huntington Avenue | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Hyde Park | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| Jamaica Plain | Boston | The New York, New Haven and Hartford Railroad Company |
| JFK/UMass | Boston | Massachusetts Bay Transportation Authority |
| Lansdowne | Boston | Massachusetts Bay Transportation Authority |
| Mattapan | Boston | The New York, New Haven and Hartford Railroad Company |
| Morton Street | Boston | The New York, New Haven and Hartford Railroad Company Massachusetts Bay Transportation Authority |
| Mount Bowdoin | Boston | The New York, New Haven and Hartford Railroad Company |
| Mount Hope | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company |
| Mt. Bowdoin | Boston | The New York, New Haven and Hartford Railroad Company |
| Neponset | Boston | The New York, New Haven and Hartford Railroad Company |
| Newmarket | Boston | Massachusetts Bay Transportation Authority |
| North Station | Boston | Massachusetts Bay Transportation Authority |
| Orient Heights | Boston | Boston, Revere Beach and Lynn Railroad |
| Pope's Hill | Boston | The New York, New Haven and Hartford Railroad Company |
| Readville | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| River Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Roslindale | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company |
| Roslindale Village | Boston | Massachusetts Bay Transportation Authority |
| Roxbury | Boston | The New York, New Haven and Hartford Railroad Company |
| Roylston Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Rugby | Boston | The New York, New Haven and Hartford Railroad Company |
| Ruggles | Boston | Massachusetts Bay Transportation Authority |
| Savin Hill | Boston | The New York, New Haven and Hartford Railroad Company |
| Shawmut | Boston | The New York, New Haven and Hartford Railroad Company |
| Shawmut Junction | Boston | The New York, New Haven and Hartford Railroad Company |
| South Bay Junction | Boston | The New York, New Haven and Hartford Railroad Company |
| South Boston | Boston | The New York, New Haven and Hartford Railroad Company |
| South Station | Boston | Massachusetts Bay Transportation Authority Cape Cod Regional Transit Authority |
| Spring Street | Boston | The New York, New Haven and Hartford Railroad Company |
| Suffolk Downs | Boston | Boston, Revere Beach and Lynn Railroad |
| Talbot Avenue | Boston | Massachusetts Bay Transportation Authority |
| Trinity Place | Boston | Boston and Albany Railroad Company The New York Central Railroad Company |
| Uphams Corner | Boston | The New York, New Haven and Hartford Railroad Company Massachusetts Bay Transportation Authority |
| West Roxbury | Boston | The New York, New Haven and Hartford Railroad Company Penn Central Company Massachusetts Bay Transportation Authority |
| Wood Island | Boston | Boston, Revere Beach and Lynn Railroad |