| Station | Location |
|---|---|
| Cliffside | Milford (town), New York |
| Clinton Crossing | Hartwick, New York |
| Colliers | Milford (town), New York |
| Cooperstown | Cooperstown, New York |
| Cooperstown Junction | Milford (town), New York |
| County Farm | Middlefield, New York |
| Harwick Seminary | Hartwick, New York |
| Milford | Milford (village), New York |
| Oneonta | Oneonta (city), New York |
| Phoenix Mills | Otsego, New York |
| Portlandville | Milford (town), New York |